Service engine light was on and didnt pass.

Service engine light was on and didnt pass inspection. Replaced spark plugs, fuel injectors and a sensor that goes on the fuel tank. The battery was disconnected before the repairs were done. The service engine light turned off but the scanner still shows the codes as not complete and did not pass inspection again. I was told to drive it for several miles and I drove it for a week for quite a few miles and still not passing due to codes not complete.