1995 Honda Civic Timing issue

That's not a timing problem. You have a misfire, and by the sounds of it, multiple cylinders are misfiring. The spark plugs and wires are the logical guess, but you also have to consider loss of compression, non-firing fuel injectors, and other engine mechanical problems.

Also, since the spark plugs were recently replaced, a common cause of this problem is one or more spark plug wires that didn't get fully-seated. There will be arcing from the terminal to the spark plug at first, until that terminal burns away far enough to cause the misfire.

Start by removing the spark plug wires and looking inside the boots for signs of arcing or burning rubber. Every car will develop this problem if given enough time and miles. We fix 'em for that ; we don't get rid of them, because it still has to be fixed for the next owner.